First off, if Circuit City did not connect the pink wire on your unit, TAKE IT BACK TO THEM AND INSIST IT IS CONNECTED! A Scion TC is not a very difficult car to work on, and the VSS on that car is no different. This will provide the unit with more accurate speed indications.
Second, if you don't have the harness in the spot labled "Harness 2", then while you are at Circuit City, insist they give it to you. It comes packaged with the unit, you bought the unit, so all of the parts that come with it are YOURS!
All together, you should have 5 items plugged into the back of the Z2 at a minimum. The main harness, harness 1, harness 2, the AM/FM antenna, and the GPS antenna. If you have the Buetooth unit or XM or anything else, then you will have more.
Once you have all of your parts, follow the directions AS LISTED and your Z2 will be bypassed. Hundreds have done it before you, and most have done it without any problems. The one's who did have problems, did not follow the instructions.