The "reset" you speak of (what people have been told to do) is pressing the recessed button to the right of the eject button which is basically pulling power and then applying it again.
If you plan on removing the Z1 and making the modifications to the harness like I say in the web site, you are basically doing that reset anyway. Once you plug it in, it's "reset" (at least this "level 1" style reset).
That reset is only needed when people are having problems and they are still getting a message about the parking brake not installed correctly. It really doesn't hurt anything, but shouldn't be necessary.... like I said you are basically doing it by pulling power.
When you take out the unit and do the harness mod, when you plug it all back together it will just work.