ducatiboy said:
Not to insult your install but I would put my money on the install before faulty hardware. Just a gut feeling.
Boy do I agree. This really sounds like an installer problem....and it's probably a ground either missing or losing it's integrity. (poor connection)
You have to remember...most of these shops try and install these systems as quick as possible so they can move on to the next job. You don't always get the best job...and they rarely take the time to investigate just what they can tap into and what they can't. I'm afraid you are stuck with figuring this out yourself or taking it back to the shop and have them do it. The problem with that is...if they screwed it up the first time, what makes you think they will take the time to get it right this time...especially when this one is for free!
By the way, with the brake ground hooked up, you will run into issues with your bypass mod that will require a reset if I'm not mistaken. If you are uncomfortable with your skills to do this properly, I would search for someone or a shop who has a lot of experience with this particular model.