I wonder the same thing. I also noticed on mine that I had both the green and the purple RCAs connected. I know the purple is unused but have no clue if it goes somewhere or is just a open circuit. If it goes somewhere it may be causing feedback to the head unit. To me the issue seems related to the factory subs and amps. I disconnected the purple RCA but have not really been able to do a good test to see if the issue is fixed.
These head units do put out like 4 volts on the pre-amps maybe it's too much for the stock amps and there is some type of feedback that is causing the head uni